public class MZTabCommandLine extends Object
MZTabCommandLine class.
Constructor and Description |
---|
MZTabCommandLine() |
Modifier and Type | Method and Description |
---|---|
protected static void |
handleSemanticValidation(org.apache.commons.cli.CommandLine line,
String checkSemanticOpt,
File inFile,
MZTabFileParser mzTabParser) |
protected static void |
handleValidation(org.apache.commons.cli.CommandLine line,
String checkOpt,
File outFile,
MZTabErrorType.Level level,
String checkSemanticOpt) |
static void |
main(String[] args)
Runs the command line parser for mzTab, including validation.
|
public static void main(String[] args) throws Exception
Runs the command line parser for mzTab, including validation.
protected static void handleValidation(org.apache.commons.cli.CommandLine line, String checkOpt, File outFile, MZTabErrorType.Level level, String checkSemanticOpt) throws URISyntaxException, JAXBException, IllegalArgumentException
protected static void handleSemanticValidation(org.apache.commons.cli.CommandLine line, String checkSemanticOpt, File inFile, MZTabFileParser mzTabParser) throws JAXBException, MalformedURLException, URISyntaxException
Copyright © 2018 Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V.. All rights reserved.