public class AnnotateVCFCommand extends JannovarAnnotationCommand
Constructor and Description |
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AnnotateVCFCommand(String[] argv,
net.sourceforge.argparse4j.inf.Namespace args) |
Modifier and Type | Method and Description |
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void |
run()
This function inputs a VCF file, and prints the annotated version thereof to a file (name of the original file
with the suffix .de.charite.compbio.jannovar).
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public AnnotateVCFCommand(String[] argv, net.sourceforge.argparse4j.inf.Namespace args) throws CommandLineParsingException
CommandLineParsingException
public void run() throws JannovarException
run
in class JannovarCommand
JannovarException
- on problems with the annotationCopyright © 2019. All rights reserved.