public class JannovarGatherStatisticsOptions extends JannovarBaseOptions
statistics
commandConstructor and Description |
---|
JannovarGatherStatisticsOptions() |
Modifier and Type | Method and Description |
---|---|
String |
getDatabaseFilePath() |
String |
getPathInputVCF() |
String |
getPathOutputReport() |
void |
setDatabaseFilePath(String databaseFilePath) |
void |
setFromArgs(net.sourceforge.argparse4j.inf.Namespace args)
Get values from
Namespace object |
void |
setPathInputVCF(String pathInputVCF) |
void |
setPathOutputReport(String pathOutputReport) |
static void |
setupParser(net.sourceforge.argparse4j.inf.Subparsers subParsers)
Setup
ArgumentParser |
String |
toString() |
getFtpProxy, getHttpProxy, getHttpsProxy, getVerbosity, isReportProgress, setFtpProxy, setHttpProxy, setHttpsProxy, setReportProgress, setupParser, setVerbosity
public static void setupParser(net.sourceforge.argparse4j.inf.Subparsers subParsers)
ArgumentParser
subParsers
- Subparsers
to setuppublic void setFromArgs(net.sourceforge.argparse4j.inf.Namespace args) throws CommandLineParsingException
JannovarBaseOptions
Namespace
objectsetFromArgs
in class JannovarBaseOptions
args
- Namespace
to get the option values fromCommandLineParsingException
- on problems parsing a given URLpublic String getPathInputVCF()
public void setPathInputVCF(String pathInputVCF)
public String getPathOutputReport()
public void setPathOutputReport(String pathOutputReport)
public String getDatabaseFilePath()
public void setDatabaseFilePath(String databaseFilePath)
public String toString()
toString
in class JannovarBaseOptions
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