public class AnnotatePositionCommand extends JannovarAnnotationCommand
Constructor and Description |
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AnnotatePositionCommand(String[] argv,
net.sourceforge.argparse4j.inf.Namespace args) |
Modifier and Type | Method and Description |
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void |
run()
This function will simply annotate given chromosomal position with HGVS compliant output.
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public AnnotatePositionCommand(String[] argv, net.sourceforge.argparse4j.inf.Namespace args) throws CommandLineParsingException
CommandLineParsingException
public void run() throws JannovarException
For example, the change chr1:909238G>C could be converted to PLEKHN1:NM_032129.2:c.1460G>C,p.(Arg487Pro).
run
in class JannovarCommand
options
- configuration for the commandAnnotationException
- on problems in the annotation processJannovarException
- on problems executing the command.Copyright © 2019. All rights reserved.