public class DbNsfpFields extends Object
Defines preconfigured GenericTSVValueColumnDescription
Constructor and Description |
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DbNsfpFields() |
public static final com.google.common.collect.ImmutableMap<String,GenericTSVValueColumnDescription> DBNSFP_FIELDS
public static String hg38_chr
public static String hg38_pos
public static String ref
public static String alt
public static String aaref
public static String aaalt
public static String rs_dbSNP147
public static String hg19_chr
public static String hg19_pos
public static String hg18_chr
public static String hg18_pos
public static String genename
public static String cds_strand
public static String refcodon
public static String codonpos
public static String codon_degeneracy
public static String Ancestral_allele
public static String AltaiNeandertal
public static String Denisova
public static String Ensembl_geneid
public static String Ensembl_transcriptid
public static String Ensembl_proteinid
public static String aapos
public static String SIFT_score
public static String SIFT_converted_rankscore
public static String SIFT_pred
public static String Uniprot_acc_Polyphen2
public static String Uniprot_id_Polyphen2
public static String Uniprot_aapos_Polyphen2
public static String Polyphen2_HDIV_score
public static String Polyphen2_HDIV_rankscore
public static String Polyphen2_HDIV_pred
public static String Polyphen2_HVAR_score
public static String Polyphen2_HVAR_rankscore
public static String Polyphen2_HVAR_pred
public static String LRT_score
public static String LRT_converted_rankscore
public static String LRT_pred
public static String LRT_Omega
public static String MutationTaster_score
public static String MutationTaster_converted_rankscore
public static String MutationTaster_pred
public static String MutationTaster_model
public static String MutationTaster_AAE
public static String MutationAssessor_UniprotID
public static String MutationAssessor_variant
public static String MutationAssessor_score
public static String MutationAssessor_score_rankscore
public static String MutationAssessor_pred
public static String FATHMM_score
public static String FATHMM_converted_rankscore
public static String FATHMM_pred
public static String PROVEAN_score
public static String PROVEAN_converted_rankscore
public static String PROVEAN_pred
public static String Transcript_id_VEST3
public static String Transcript_var_VEST3
public static String VEST3_score
public static String VEST3_rankscore
public static String MetaSVM_score
public static String MetaSVM_rankscore
public static String MetaSVM_pred
public static String MetaLR_score
public static String MetaLR_rankscore
public static String MetaLR_pred
public static String Reliability_index
public static String M_CAP_score
public static String M_CAP_rankscore
public static String M_CAP_pred
public static String REVEL_score
public static String REVEL_rankscore
public static String MutPred_score
public static String MutPred_rankscore
public static String MutPred_protID
public static String MutPred_AAchange
public static String MutPred_Top5features
public static String CADD_raw
public static String CADD_raw_rankscore
public static String CADD_phred
public static String DANN_score
public static String DANN_rankscore
public static String fathmm_MKL_coding_score
public static String fathmm_MKL_coding_rankscore
public static String fathmm_MKL_coding_pred
public static String fathmm_MKL_coding_group
public static String Eigen_coding_or_noncoding
public static String Eigen_raw
public static String Eigen_phred
public static String Eigen_PC_raw
public static String Eigen_PC_phred
public static String Eigen_PC_raw_rankscore
public static String GenoCanyon_score
public static String GenoCanyon_score_rankscore
public static String integrated_fitCons_score
public static String integrated_fitCons_score_rankscore
public static String integrated_confidence_value
public static String GM12878_fitCons_score
public static String GM12878_fitCons_score_rankscore
public static String GM12878_confidence_value
public static String H1_hESC_fitCons_score
public static String H1_hESC_fitCons_score_rankscore
public static String H1_hESC_confidence_value
public static String HUVEC_fitCons_score
public static String HUVEC_fitCons_score_rankscore
public static String HUVEC_confidence_value
public static String GERPpp_NR
public static String GERPpp_RS
public static String GERPpp_RS_rankscore
public static String phyloP100way_vertebrate
public static String phyloP100way_vertebrate_rankscore
public static String phyloP20way_mammalian
public static String phyloP20way_mammalian_rankscore
public static String phastCons100way_vertebrate
public static String phastCons100way_vertebrate_rankscore
public static String phastCons20way_mammalian
public static String phastCons20way_mammalian_rankscore
public static String SiPhy_29way_pi
public static String SiPhy_29way_logOdds
public static String SiPhy_29way_logOdds_rankscore
public static String G1000_Gp3_AC
public static String G1000_Gp3_AF
public static String G1000_Gp3_AFR_AC
public static String G1000_Gp3_AFR_AF
public static String G1000_Gp3_EUR_AC
public static String G1000_Gp3_EUR_AF
public static String G1000_Gp3_AMR_AC
public static String G1000_Gp3_AMR_AF
public static String G1000_Gp3_EAS_AC
public static String G1000_Gp3_EAS_AF
public static String G1000_Gp3_SAS_AC
public static String G1000_Gp3_SAS_AF
public static String TWINSUK_AC
public static String TWINSUK_AF
public static String ALSPAC_AC
public static String ALSPAC_AF
public static String ESP6500_AA_AC
public static String ESP6500_AA_AF
public static String ESP6500_EA_AC
public static String ESP6500_EA_AF
public static String ExAC_AC
public static String ExAC_AF
public static String ExAC_Adj_AC
public static String ExAC_Adj_AF
public static String ExAC_AFR_AC
public static String ExAC_AFR_AF
public static String ExAC_AMR_AC
public static String ExAC_AMR_AF
public static String ExAC_EAS_AC
public static String ExAC_EAS_AF
public static String ExAC_FIN_AC
public static String ExAC_FIN_AF
public static String ExAC_NFE_AC
public static String ExAC_NFE_AF
public static String ExAC_SAS_AC
public static String ExAC_SAS_AF
public static String ExAC_nonTCGA_AC
public static String ExAC_nonTCGA_AF
public static String ExAC_nonTCGA_Adj_AC
public static String ExAC_nonTCGA_Adj_AF
public static String ExAC_nonTCGA_AFR_AC
public static String ExAC_nonTCGA_AFR_AF
public static String ExAC_nonTCGA_AMR_AC
public static String ExAC_nonTCGA_AMR_AF
public static String ExAC_nonTCGA_EAS_AC
public static String ExAC_nonTCGA_EAS_AF
public static String ExAC_nonTCGA_FIN_AC
public static String ExAC_nonTCGA_FIN_AF
public static String ExAC_nonTCGA_NFE_AC
public static String ExAC_nonTCGA_NFE_AF
public static String ExAC_nonTCGA_SAS_AC
public static String ExAC_nonTCGA_SAS_AF
public static String ExAC_nonpsych_AC
public static String ExAC_nonpsych_AF
public static String ExAC_nonpsych_Adj_AC
public static String ExAC_nonpsych_Adj_AF
public static String ExAC_nonpsych_AFR_AC
public static String ExAC_nonpsych_AFR_AF
public static String ExAC_nonpsych_AMR_AC
public static String ExAC_nonpsych_AMR_AF
public static String ExAC_nonpsych_EAS_ACExAC_nonpsych_EAS_AF
public static String ExAC_nonpsych_FIN_AC
public static String ExAC_nonpsych_FIN_AF
public static String ExAC_nonpsych_NFE_AC
public static String ExAC_nonpsych_NFE_AF
public static String ExAC_nonpsych_SAS_AC
public static String ExAC_nonpsych_SAS_AF
public static String clinvar_rs
public static String clinvar_clnsig
public static String clinvar_trait
public static String clinvar_golden_starsInterpro_domain
public static String GTEx_V6_gene
public static String GTEx_V6_tissue
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