public class JannovarDownloadOptions extends JannovarDBOptions
dataSourceFiles
Constructor and Description |
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JannovarDownloadOptions() |
Modifier and Type | Method and Description |
---|---|
List<String> |
getDatabaseNames() |
String |
getDownloadDir() |
List<String> |
getGeneIdentifiers() |
String |
getOutputFile() |
void |
setDatabaseNames(List<String> databaseNames) |
void |
setDownloadDir(String downloadDir) |
void |
setFromArgs(net.sourceforge.argparse4j.inf.Namespace args)
Get values from
Namespace object |
void |
setGeneIdentifiers(List<String> geneIdentifiers) |
void |
setOutputFile(String outputFile) |
static void |
setupParser(net.sourceforge.argparse4j.inf.Subparsers subParsers)
Setup
ArgumentParser |
String |
toString() |
getDataSourceFiles, setDataSourceFiles
getFtpProxy, getHttpProxy, getHttpsProxy, getVerbosity, isReportProgress, setFtpProxy, setHttpProxy, setHttpsProxy, setReportProgress, setupParser, setVerbosity
public static void setupParser(net.sourceforge.argparse4j.inf.Subparsers subParsers)
ArgumentParser
subParsers
- Subparsers
to setuppublic void setFromArgs(net.sourceforge.argparse4j.inf.Namespace args) throws CommandLineParsingException
JannovarBaseOptions
Namespace
objectsetFromArgs
in class JannovarDBOptions
args
- Namespace
to get the option values fromCommandLineParsingException
- on problems parsing a given URLpublic String getDownloadDir()
public void setDownloadDir(String downloadDir)
public String getOutputFile()
public void setOutputFile(String outputFile)
public String toString()
toString
in class JannovarDBOptions
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