public static class JannovarAnnotateVCFOptions.BedAnnotationOptions extends Object
Constructor and Description |
---|
BedAnnotationOptions(String pathBed,
String infoField,
String description) |
BedAnnotationOptions(String pathBed,
String infoField,
String description,
int colNo) |
Modifier and Type | Method and Description |
---|---|
int |
getColNo() |
String |
getDescription() |
String |
getInfoField() |
String |
getPathBed() |
static JannovarAnnotateVCFOptions.BedAnnotationOptions |
parseFrom(String strValue)
Construct new BED annotation from command line option value.
|
String |
toString() |
public BedAnnotationOptions(String pathBed, String infoField, String description)
public static JannovarAnnotateVCFOptions.BedAnnotationOptions parseFrom(String strValue)
The value must have the format: pathToBed:infoField:description[:colNo]
strValue
- String to parse fromJannovarAnnotateVCFOptions.BedAnnotationOptions
from the given string value.public String getPathBed()
public int getColNo()
public String getInfoField()
public String getDescription()
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