public class BedFileAnnotator extends Object implements Closeable
VariantContext
s using BED files.Constructor and Description |
---|
BedFileAnnotator(JannovarAnnotateVCFOptions.BedAnnotationOptions options) |
Modifier and Type | Method and Description |
---|---|
htsjdk.variant.variantcontext.VariantContext |
annotateVariantContext(htsjdk.variant.variantcontext.VariantContext vc)
Annotate and build the variant
|
void |
close() |
void |
extendHeader(htsjdk.variant.vcf.VCFHeader vcfHeader)
Add header line describing the INFO field.
|
public BedFileAnnotator(JannovarAnnotateVCFOptions.BedAnnotationOptions options)
public void extendHeader(htsjdk.variant.vcf.VCFHeader vcfHeader)
vcfHeader
- public htsjdk.variant.variantcontext.VariantContext annotateVariantContext(htsjdk.variant.variantcontext.VariantContext vc)
vc
- VariantContext
to annotateVariantContext
public void close()
close
in interface Closeable
close
in interface AutoCloseable
Copyright © 2019. All rights reserved.