Modifier and Type | Method and Description |
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protected abstract JannovarOptions |
JannovarCommand.parseCommandLine(String[] argv)
Function for parsing the command line.
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Constructor and Description |
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JannovarAnnotationCommand(String[] argv) |
JannovarCommand(String[] argv)
Initialize the JannovarCommand.
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Modifier and Type | Method and Description |
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protected JannovarOptions |
AnnotatePositionCommand.parseCommandLine(String[] argv) |
Constructor and Description |
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AnnotatePositionCommand(String[] argv) |
Modifier and Type | Method and Description |
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protected JannovarOptions |
AnnotateVCFCommand.parseCommandLine(String[] argv) |
Constructor and Description |
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AnnotateVCFCommand(String[] argv) |
Modifier and Type | Method and Description |
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protected JannovarOptions |
DatabaseListCommand.parseCommandLine(String[] argv) |
Constructor and Description |
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DatabaseListCommand(String[] argv) |
Modifier and Type | Method and Description |
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protected JannovarOptions |
DownloadCommand.parseCommandLine(String[] argv) |
Constructor and Description |
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DownloadCommand(String[] argv) |
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