Class | Description |
---|---|
AnnotatedJannovarWriter |
Annotate variant in
VariantContext and write out in Jannovar format. |
AnnotatedVariantWriter |
Interface for output writers in Jannovar class.
|
AnnotatedVCFWriter |
Annotate variant in
VariantContext and write out through HTSJDK (i.e. |
AnnotateVCFCommand |
Run annotation steps (read in VCF, write out VCF or Jannovar file format).
|
AnnotateVCFCommandLineParser |
Parser for annotate-vcf command line.
|
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